Table of Contents

Module: molecule bkchem/molecule.py

home of the molecule class

Imported modules   
from __future__ import division, generators
from atom import atom
from bond import bond
import copy
import dom_extensions
import geometry
import groups_table
import helper_graphics
from math import atan2, sin, cos, pi, sqrt
import misc
from parents import container, top_level, id_enabled
import periodic_table
import time
from warnings import warn
import xml.dom.minidom
Functions   
fuse_vertices
get_index_of_vertex_connected_to_first_vertex
  fuse_vertices 
fuse_vertices (
        i1,
        i2,
        mat,
        )

fuses vertices with indexes i1, i2 to i1, works on the mat

  get_index_of_vertex_connected_to_first_vertex 
get_index_of_vertex_connected_to_first_vertex ( mat )

returns an index of vertex that is connected to the vertex in first line of the matrix

Classes   

molecule

note that all children of simple_parent have default meta infos set


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